SNP Profiles of LF 1 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	AC	CT	CC	GG	GG	AT	AA	CT	AA	GG	GG	TT	AC
1._RUQ_17	_	_	_	_	_	_	_	AA	_	_	_	GG	_	_
2._LF_1	_	_	_	_	_	_	_	AA	_	_	_	GG	_	_
3._LF_1	_	_	_	_	_	_	_	AA	_	_	_	GG	_	_
4._LF_1	_	_	_	_	_	_	_	AA	_	_	_	GG	_	_
5._LF_1	_	_	_	_	_	_	_	AA	_	_	_	GG	_	_
6._LF_1	_	_	_	_	_	_	_	AA	_	_	_	GG	_	_
7._GC-08-285-8-57	_	_	_	_	_	_	_	AA	_	_	_	GG	_	_
8._GC-08-285-8-57	_	_	_	_	_	_	_	AA	_	_	_	GG	_	_
9._GC-08-285-8-57	_	_	_	_	_	_	_	AA	_	_	_	GG	_	_
10._GC-08-285-8-57	_	_	_	_	_	_	_	AA	_	_	_	GG	_	_
11._RUQ_17	_	_	_	_	_	_	_	AA	_	_	_	GG	_	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AC	CC	AC	CT	AC	AA	CC	AA	CC	CC	TT	AG	CG
1._RUQ_17	AA	_	_	_	_	CC	_	-	_	CC	-	_	_	_
2._LF_1	_	_	_	_	_	CC	_	CC	_	CC	_	_	_	_
3._LF_1	_	_	_	_	_	CC	_	CC	_	CC	_	_	_	_
4._LF_1	_	_	_	_	_	CC	_	CC	_	CC	_	_	_	_
5._LF_1	_	_	_	_	_	CC	_	CC	_	CC	_	_	_	_
6._LF_1	_	_	_	_	_	CC	_	CC	_	CC	_	_	_	_
7._GC-08-285-8-57	AA	_	_	_	_	CC	_	CC	_	CC	CC	_	_	_
8._GC-08-285-8-57	AA	_	_	_	_	CC	_	CC	_	CC	CC	_	_	_
9._GC-08-285-8-57	AA	_	_	_	_	CC	_	CC	_	CC	CC	_	_	_
10._GC-08-285-8-57	AA	_	_	_	_	CC	_	CC	_	CC	CC	_	_	_
11._RUQ_17	AA	_	_	_	_	CC	_	CC	_	CC	GG	_	_	_

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AG	CG	CC	TT	AA	CT	CT	AC	AA	TT	CC	AG	CG	AG
1._RUQ_17	_	_	CC	TT	AA	_	_	AC	_	_	CC	-	_	AG
2._LF_1	AG	_	_	TT	_	_	_	_	_	_	CC	_	_	AG
3._LF_1	_	_	_	TT	_	_	_	_	_	_	CC	_	_	AG
4._LF_1	_	_	_	TT	_	_	_	_	_	_	CC	_	_	AG
5._LF_1	_	_	_	TT	_	_	_	_	_	_	CC	_	_	AG
6._LF_1	_	_	_	TT	_	_	_	_	_	_	CC	_	_	AG
7._GC-08-285-8-57	_	_	CT	TT	AA	_	_	AC	_	GG	CC	AG	_	AG
8._GC-08-285-8-57	_	_	CT	TT	AA	_	_	AC	_	GG	CC	AG	_	AG
9._GC-08-285-8-57	_	_	CT	TT	AA	_	_	AC	_	GG	CC	AG	_	AG
10._GC-08-285-8-57	_	_	CT	TT	AA	_	_	AC	_	GG	CC	AG	_	AG
11._RUQ_17	_	_	_	AA	AA	_	_	AC	_	CC	GG	AG	_	AG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CC	TT	AT	CC	AA	TT	CC	GG	AC	CC	GG	GG	TT	GG
1._RUQ_17	CC	_	_	_	_	_	_	_	_	_	-	_	_	_
2._LF_1	_	_	_	_	AA	_	CC	_	_	_	GG	_	_	_
3._LF_1	_	_	_	_	AA	_	CC	_	_	_	GG	_	_	_
4._LF_1	_	_	_	_	AA	_	CC	_	_	_	GG	_	_	_
5._LF_1	_	_	_	_	AA	_	CC	_	_	_	GG	_	_	_
6._LF_1	_	_	_	_	AA	_	CC	_	_	_	GG	_	_	_
7._GC-08-285-8-57	CC	_	_	_	AA	_	CC	_	_	_	GG	_	_	_
8._GC-08-285-8-57	CC	_	_	_	AA	_	CC	_	_	_	GG	_	_	_
9._GC-08-285-8-57	CC	_	_	_	AA	_	CC	_	_	_	GG	_	_	_
10._GC-08-285-8-57	CC	_	_	_	AA	_	CC	_	_	_	GG	_	_	_
11._RUQ_17	_	_	_	_	AA	_	_	_	_	_	_	_	_	_

	57	58	59	60
_Input profile	GG	CC	CT	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_17	_	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._LF_1	_	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._LF_1	_	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._LF_1	_	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._LF_1	_	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._LF_1	_	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._GC-08-285-8-57	_	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._GC-08-285-8-57	_	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._GC-08-285-8-57	_	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._GC-08-285-8-57	_	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._RUQ_17	_	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: LF_1 RUQ_17

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

1._LF_1 RUQ_17

96.2 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._LF_1

96.2 %
13 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: C0298

Dapeng Zhang, 2016

3._LF_1

95.8 %
12 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8857 8

Dapeng Zhang, 2016

4._LF_1

95.8 %
12 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8857 7

Dapeng Zhang, 2016

5._LF_1

95.8 %
12 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8857 4

Dapeng Zhang, 2016

6._LF_1

95.8 %
12 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8857 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

7._LF_1 GC-08-285-8-57

90 %
20 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

8._LF_1 GC-08-285-8-57

90 %
20 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

9._LF_1 GC-08-285-8-57

90 %
20 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

10._LF_1 GC-08-285-8-57

90 %
20 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

11._LF_1 RUQ_17

70 %
15 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP13	2	TcSNP19	3	TcSNP33	4	TcSNP49	5	TcSNP52
6	TcSNP131	7	TcSNP143	8	TcSNP144	9	TcSNP176	10	TcSNP189
11	TcSNP194	12	TcSNP230	13	TcSNP290	14	TcSNP305	15	TcSNP329
16	TcSNP363	17	TcSNP421	18	TcSNP519	19	TcSNP522	20	TcSNP529
21	TcSNP546	22	TcSNP577	23	TcSNP589	24	TcSNP591	25	TcSNP602
26	TcSNP640	27	TcSNP642	28	TcSNP644	29	TcSNP645	30	TcSNP660
31	TcSNP702	32	TcSNP723	33	TcSNP731	34	TcSNP739	35	TcSNP800
36	TcSNP823	37	TcSNP835	38	TcSNP836	39	TcSNP872	40	TcSNP899
41	TcSNP945	42	TcSNP998	43	TcSNP999	44	TcSNP1010	45	TcSNP1019
46	TcSNP1053	47	TcSNP1062	48	TcSNP1112	49	TcSNP1144	50	TcSNP1205
51	TcSNP1230	52	TcSNP1237	53	TcSNP1253	54	TcSNP1275	55	TcSNP1293
56	TcSNP1401	57	TcSNP1404	58	TcSNP1458	59	TcSNP1524	60	TcSNP1527